Statistiques de nettoyage
Les paramètres de nettoyages utilisés sont :
- 150 pb < taille des séquences < 600 pb,
- 0% de base ambiguës (N),
- taille des homopolymères < 10pb,
- primer forward = TACGGRAGGCAGCAG trouvé avec un minimum de 12 matches,
- primer reverse = TACCAGGGTATCTAATCCT trouvé avec un minimum de 17 matches,
- taille des séquences complètes > 350pb
| Echantillons |
Total initial |
Total final |
Trop courtes/longues |
Composées trop de N |
Homopolymères |
Trop d'erreurs dans les primers |
Séquences complètes trop courtes |
% supprimées |
|
| 22AZ(MID65+MID66)
| 8380 |
7087 |
453 |
709 |
0 |
104 |
27 |
15.4% |
len |
| 8AZ(MID19+MID20)
| 11333 |
9393 |
613 |
1158 |
1 |
153 |
15 |
17.1% |
len |
| 5AZ(MID13+MID14)
| 6682 |
5606 |
370 |
531 |
0 |
173 |
2 |
16.1% |
len |
| 29AZ(MID83+MID84)
| 7825 |
6162 |
519 |
1006 |
0 |
131 |
7 |
21.3% |
len |
| 4AZ(MID7+MID8)
| 8210 |
6957 |
487 |
616 |
1 |
139 |
10 |
15.3% |
len |
| 24AZ(MID69+MID70)
| 10684 |
8924 |
667 |
902 |
0 |
174 |
17 |
16.5% |
len |
| 25AZ(MID71+MID72)
| 7654 |
6170 |
435 |
879 |
0 |
163 |
7 |
19.4% |
len |
| 36AZ(MID103+MID104)
| 6743 |
5324 |
744 |
547 |
0 |
122 |
6 |
21.0% |
len |
| 34AZ(MID97+MID98)
| 7677 |
6340 |
417 |
817 |
0 |
94 |
9 |
17.4% |
len |
| 1AZ(MID1+MID2)
| 8071 |
6757 |
433 |
738 |
1 |
123 |
19 |
16.3% |
len |
| 31AZ(MID89+MID90)
| 8465 |
6487 |
571 |
1231 |
1 |
166 |
9 |
23.4% |
len |
| 46AZ(MID123+MID124)
| 8530 |
7329 |
435 |
593 |
0 |
161 |
12 |
14.1% |
len |
| 40AZ(MID109+MID110)
| 10306 |
8678 |
511 |
904 |
0 |
190 |
23 |
15.8% |
len |
| 47AZ(MID125+MID126)
| 9432 |
7860 |
482 |
853 |
0 |
222 |
15 |
16.7% |
len |
| 35AZ(MID99+MID100)
| 7438 |
6281 |
418 |
639 |
0 |
91 |
9 |
15.6% |
len |
| 16AZ(MID43+MID44)
| 2780 |
2350 |
149 |
241 |
0 |
40 |
0 |
15.5% |
len |
| 32AZ(MID91+MID92)
| 49519 |
41779 |
2767 |
4243 |
4 |
666 |
60 |
15.6% |
len |
| 27AZ(MID79+MID80)
| 6757 |
5708 |
377 |
556 |
1 |
111 |
4 |
15.5% |
len |
| 41AZ(MID111+MID112)
| 8720 |
7290 |
448 |
795 |
1 |
173 |
13 |
16.4% |
len |
| 48AZ(MID127+MID128)
| 9980 |
8393 |
495 |
910 |
0 |
156 |
26 |
15.9% |
len |
| 3AZ(MID5+MID6)
| 6944 |
5821 |
370 |
617 |
0 |
107 |
29 |
16.2% |
len |
| 39AZ(MID107+MID108)
| 8452 |
7116 |
422 |
751 |
2 |
137 |
24 |
15.8% |
len |
| 17AZ(MID53+MID54)
| 9137 |
7732 |
467 |
758 |
0 |
164 |
16 |
15.4% |
len |
| 33AZ(MID95+MID96)
| 9080 |
7601 |
530 |
780 |
0 |
148 |
21 |
16.3% |
len |
| 15AZ(MID41+MID42)
| 7523 |
6406 |
392 |
612 |
0 |
98 |
15 |
14.8% |
len |
| 14AZ(MID39+MID40)
| 7671 |
6395 |
429 |
689 |
0 |
152 |
6 |
16.6% |
len |
| 42AZ(MID115+MID116)
| 7335 |
6168 |
350 |
677 |
0 |
122 |
18 |
15.9% |
len |
| 49AZ(MID129+MID130)
| 9355 |
7774 |
485 |
891 |
0 |
188 |
17 |
16.9% |
len |
| 45AZ(MID121+MID122)
| 6317 |
5304 |
309 |
598 |
0 |
94 |
12 |
16.0% |
len |
| 6AZ(MID15+MID16)
| 7514 |
6117 |
424 |
886 |
1 |
80 |
6 |
18.6% |
len |
| 43AZ(MID117+MID118)
| 8513 |
7254 |
391 |
698 |
0 |
166 |
4 |
14.8% |
len |
| 9AZ(MID21+MID22)
| 10046 |
8430 |
559 |
928 |
1 |
108 |
20 |
16.1% |
len |
| 10AZ(MID23+MID24)
| 7350 |
6190 |
395 |
659 |
0 |
97 |
9 |
15.8% |
len |
| 50AZ(MID145+MID146)
| 7044 |
5986 |
381 |
517 |
0 |
138 |
22 |
15.0% |
len |
| 28AZ(MID81+MID82)
| 7844 |
6568 |
410 |
694 |
1 |
153 |
18 |
16.3% |
len |
| 21AZ(MID61+MID62)
| 6702 |
5654 |
336 |
597 |
1 |
97 |
17 |
15.6% |
len |
| 7AZ(MID17+MID18)
| 9074 |
7744 |
426 |
760 |
1 |
121 |
22 |
14.7% |
len |
| 37AZ(MID11+MID10)
| 6730 |
5670 |
384 |
541 |
1 |
129 |
5 |
15.8% |
len |
| 38AZ(MID147+MID148)
| 7782 |
6454 |
465 |
709 |
0 |
122 |
32 |
17.1% |
len |
| 44AZ(MID119+MID120)
| 7405 |
6188 |
392 |
696 |
0 |
118 |
11 |
16.4% |
len |
| 23AZ(MID67+MID68)
| 10381 |
8788 |
494 |
877 |
0 |
206 |
16 |
15.3% |
len |
| 12AZ(MID35+MID36)
| 7284 |
6000 |
375 |
792 |
1 |
99 |
17 |
17.6% |
len |
| 20AZ(MID59+MID60)
| 7525 |
6340 |
434 |
599 |
0 |
144 |
8 |
15.7% |
len |
| 19AZ(MID57+MID58)
| 7257 |
6073 |
397 |
669 |
0 |
115 |
3 |
16.3% |
len |
| 18AZ(MID55+MID56)
| 10845 |
9079 |
585 |
968 |
1 |
204 |
8 |
16.3% |
len |
| 2AZ(MID3+MID4)
| 8797 |
7280 |
581 |
719 |
0 |
206 |
11 |
17.2% |
len |
| 11AZ(MID33+MID34)
| 8003 |
6746 |
391 |
724 |
0 |
139 |
3 |
15.7% |
len |
| 30AZ(MID87+MID88)
| 7294 |
6127 |
375 |
647 |
1 |
134 |
10 |
16.0% |
len |
| 26AZ(MID77+MID78)
| 7585 |
6043 |
649 |
644 |
0 |
232 |
17 |
20.3% |
len |
| 13AZ(MID37+MID38)
| 6420 |
5404 |
320 |
588 |
0 |
93 |
15 |
15.8% |
len |
| Total |
444395 |
371327 |
24709 |
40153 |
21 |
7463 |
722 |
16.4% |
|
Fichiers résultats
GBED33301_16Scleaner.tar.gz
